GgaEX6027187 @ galGal3
Exon Skipping
Gene
ENSGALG00000000252 | Q8AV15_CHICK
Description
NA
Coordinates
chr27:1552129-1554342:-
Coord C1 exon
chr27:1554201-1554342
Coord A exon
chr27:1553182-1553394
Coord C2 exon
chr27:1552129-1552284
Length
213 bp
Sequences
Splice sites
3' ss Seq
CGTGCTTCCTCTTCCCACAGACA
3' ss Score
12.39
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
GAAGTGCCCAGAGGGGTATGAGTGCATGAAGGCGGGCAGGAACCCCAACTATGGCTACACCAGCTACGACACCTTCAGCTGGGCTTTCCTCTCCCTCTTCCGCCTCATGACACAGGACTTCTGGGAGAACCTCTTCCAGCTG
Seq A exon
ACACTACGTGCAGCAGGGAAAACGTACATGATCTTCTTCGTGGTGGTTATATTCCTGGGTTCCTTCTACCTCATCAACCTCATCCTGGCCGTGGTGGCCATGGCCTACGCAGAGCAAAATGATGCCACGATGCTGGAAGCACAGCAGAAGGAGGAGGAGTTCCAGCAGCTCATGGAGCAGCTGAAGAAGCACCAGGAGGAGCAGGAAAAGCAG
Seq C2 exon
TTGCAGGACAGGCAGTCCAGCAGCAGTTCCCTGCACAGCAGCGCGGCCGGGAAGAAGAGCGACTCGGATCTGAACAGCGACCAGGACAAGGCAAAGGACTGCAATGGGCAGGTGGTCCCCAAGGTTGTGCTGCAGCGCTCTGCCACGGTGATCGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000252-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.310 C2=0.596
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(17.0=100)
A:
PF0052026=Ion_trans=PD(11.2=43.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGTATGAGTGCATGAAGGC
R:
TTCGATCACCGTGGCAGAGC
Band lengths:
286-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]