BtaEX6089641 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004770 | SCN4A
Description
sodium channel, voltage gated, type IV alpha subunit [Source:HGNC Symbol;Acc:HGNC:10591]
Coordinates
chr19:48816734-48819390:-
Coord C1 exon
chr19:48819249-48819390
Coord A exon
chr19:48817499-48817708
Coord C2 exon
chr19:48816734-48816887
Length
210 bp
Sequences
Splice sites
3' ss Seq
TCCCCCTCCCTCACTCCCAGACC
3' ss Score
10.09
5' ss Seq
AAGGTCTGG
5' ss Score
3.93
Exon sequences
Seq C1 exon
GCATTGCCCTGAAGGTTATGAGTGCATCAAGGCCGGGCGGAACCCCAACTACGGCTACACCAGCTACGACACCTTCAGCTGGGCCTTCCTGGCTCTCTTCCGTCTCATGACACAGGACTATTGGGAGAACCTCTTCCAGCTG
Seq A exon
ACCCTTCGAGCAGCCGGCAAGACCTACATGATCTTTTTCGTGGTCATCATTTTCCTGGGCTCCTTCTACCTCATCAACCTGATCCTGGCTGTGGTAGCCATGGCCTACGCTGAGCAGAACGAGGCCACCCTGGCCGAGGATCAGGAGAAAGAAGAGGAGTTTCAGCAGATGCTGGAGAAATTCAAAAAACAGCAGGAGGAGCTGGAGAAG
Seq C2 exon
GCCAAGGCCGCCCAGGCTCTGGAAGGTGGGGAGGTGGACGGGGACCCAGCACACAGCAAAGACTGCAACGGCAGCCTGGACACATCGGCGGGGGAGAAGGGGCCTCCGAGGCCAAGCTGCGGCACAGACAGCGGTATTTCCGATGCCATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004770-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.143 C2=0.654
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(16.7=100)
A:
PF0052026=Ion_trans=PD(11.0=44.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCTGAAGGTTATGAGTGC
R:
CTTCCATGGCATCGGAAATACC
Band lengths:
292-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]