RnoEX6050157 @ rn6
Exon Skipping
Gene
ENSRNOG00000012134 | Scn4a
Description
sodium voltage-gated channel alpha subunit 4 [Source:RGD Symbol;Acc:3636]
Coordinates
chr10:94533143-94535917:-
Coord C1 exon
chr10:94535776-94535917
Coord A exon
chr10:94534035-94534244
Coord C2 exon
chr10:94533143-94533296
Length
210 bp
Sequences
Splice sites
3' ss Seq
CCTTCTCTCCGCATCCCCAGACC
3' ss Score
9.53
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
GCACTGCCCTGAGGGCTACGAATGCATAAAGGCTGGGCGGAACCCCAACTATGGCTACACCAGCTATGACACCTTCAGCTGGGCTTTCCTGGCTCTCTTCCGGCTCATGACGCAGGACTACTGGGAGAACCTTTTCCAGCTG
Seq A exon
ACCCTACGAGCTGCTGGCAAGACCTACATGATCTTCTTCGTGGTCATCATCTTCCTGGGCTCCTTCTACCTCATCAATCTGATCCTGGCCGTGGTGGCCATGGCGTACGCTGAGCAGAATGAGGCTACCCTGGCCGAAGACCAGGAGAAAGAGGAGGAGTTCCAACAGATGCTTGAGAAATACAAAAAACATCAGGAGGAAGTGGAAAAG
Seq C2 exon
GCTAAGGCTGCCCAGGCTCTGGAAAGTGGAGAGGAGGCAGATGGGGACCCAACCCACAACAAAGACTGCAATGGGAGCCTGGATGCATCCGGGGAGAAGGGGCCCCCAAGGCCAAGCTGCAGCGCAGACAGTGCCATCTCAGATGCTATGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012134-'12-12,'12-11,14-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.143 C2=0.731
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(16.7=100)
A:
PF0052026=Ion_trans=PD(11.0=44.3)
C2:
NO
Main Skipping Isoform:
ENSRNOT00000016841fB12986
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTACGAATGCATAAAGGCT
R:
CCTCCATAGCATCTGAGATGGC
Band lengths:
284-494
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]