DreEX6067616 @ danRer10
Exon Skipping
Gene
ENSDARG00000098738 | scn4aa
Description
sodium channel, voltage-gated, type IV, alpha, a [Source:ZFIN;Acc:ZDB-GENE-051201-2]
Coordinates
chr12:4837899-4838861:+
Coord C1 exon
chr12:4837899-4838040
Coord A exon
chr12:4838120-4838314
Coord C2 exon
chr12:4838703-4838861
Length
195 bp
Sequences
Splice sites
3' ss Seq
TCCATCCCCATCTTGTTTAGACC
3' ss Score
6.97
5' ss Seq
GAGGTCAGG
5' ss Score
4.94
Exon sequences
Seq C1 exon
GAGATGTCCAGAAGGATACACGTGTATGAAAGCTGGTCGAAACCCAAACTATGGCTATACAAGCTATGACAACTTTGGATGGGCCTTTCTCGCCCTCTTCAGACTCATGACCCAGGACTTTTGGGAGAATCTTTTCCAGCTG
Seq A exon
ACCCTTCGTGCTGCTGGGAAGACTTACATGATCTTCTTCGTGGTGGTCATCTTCCTGGGCTCTTTCTACCTCATCAATCTGATCTTGGCTGTGGTTGCAATGGCATACGACGAGCAGAATGAGGCCACATTGGCCGAGGCTCGTGACAAAGAAGAGGAGTTTCAAAGATTACTTGAGCAGCTCAAGAACCAAGAG
Seq C2 exon
ACAGGCAGTAAAGCATCTTTGGCCAGCCAGAAAACACAAAGTCGAGGGTCAAACCGGACAGGTTCCCTGCACGATCTTGCAGATGAAGATGTCATAAAGGACTGTAATGGCCGAATAGTACCTCGCCTTATTGTCAACAGAGTTTCCTCTAACAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098738-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.077 C2=0.321
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(17.9=100)
A:
PF0052026=Ion_trans=PD(11.8=47.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAGCTGGTCGAAACCCAA
R:
GCGAGGTACTATTCGGCCATT
Band lengths:
242-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]