GgaEX7006016 @ galGal4
Exon Skipping
Gene
ENSGALG00000010943 | SCN1A
Description
sodium channel, voltage gated, type I alpha subunit [Source:HGNC Symbol;Acc:HGNC:10585]
Coordinates
chr7:19113312-19114466:+
Coord C1 exon
chr7:19113312-19113453
Coord A exon
chr7:19113603-19113809
Coord C2 exon
chr7:19114161-19114466
Length
207 bp
Sequences
Splice sites
3' ss Seq
GAATGCATTCTTATTTCCAGACA
3' ss Score
5.5
5' ss Seq
CAGGTATAA
5' ss Score
7.46
Exon sequences
Seq C1 exon
GCAGTGCCCAGAAGGTTACACGTGTGTGAAAGCTGGTAGAAACCCCAATTATGGCTACACAAGTTTTGACACTTTCAGCTGGGCTTTCTTGTCACTGTTTCGTTTGATGACCCAAGACTTCTGGGAAAATCTTTATCAACTG
Seq A exon
ACACTACGTGCTGCTGGGAAAACATACATGATATTTTTCGTTTTGGTGATTTTTCTGGGCTCGTTCTATCTGATCAACTTGATCCTGGCTGTGGTTGCCATGGCCTATGAAGAGCAGAACCAAGCAACCCTTGAAGAAGCAGAGCAGAAAGAGGCAGAATTTCAACAAATGCTGGAACAGCTAAAGAAGCAGCAAGAAGCAGCTCAG
Seq C2 exon
GCAGCAGCGGTGGCAGCGGCGGCAGTTACAGCATCCGCAGAGTCCAGGGAACCCAGCGCTGCGGGAGGAGCAGGTGGGCTTTCAGAAAGTTCCTCAGAGGCTTCCAAATTGAGCTCAAAGAGTGCCAAAGAGAGGAGAAATAGAAGGAAAAAAAGAAAACAGAAAGAACAGTCTGGAGGAGAGGAAAAAGATGAAGATGAATTTCACAAGTCTGAATCAGAAGACAGCATCAGAAGAAAAGGTTTCCGGTTATCTATTGAAGGCAATAGACTGACATATGAAAAGAAATACTCTTCTCCACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010943-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.130 C2=0.755
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(17.5=100),PF0253517=Zip=PU(11.4=41.7)
A:
PF0052026=Ion_trans=PD(11.6=44.9),PF0253517=Zip=FE(38.6=100)
C2:
PF0253517=Zip=PD(48.3=83.3),PF119333=DUF3451=PU(31.1=68.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGTGTGAAAGCTGGTAGA
R:
TCCTCTCCTCCAGACTGTTCT
Band lengths:
308-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]