MmuEX6101746 @ mm9
Exon Skipping
Gene
ENSMUSG00000064329 | Scn1a
Description
sodium channel, voltage-gated, type I, alpha [Source:MGI Symbol;Acc:MGI:98246]
Coordinates
chr2:66163959-66166603:-
Coord C1 exon
chr2:66166462-66166603
Coord A exon
chr2:66165708-66165914
Coord C2 exon
chr2:66163959-66164243
Length
207 bp
Sequences
Splice sites
3' ss Seq
TCTCATATTCTTGTTTCTAGACA
3' ss Score
7.82
5' ss Seq
CAGGTACTC
5' ss Score
7.04
Exon sequences
Seq C1 exon
CCAATGTCCAGAAGGATATATGTGTGTAAAAGCTGGTAGAAACCCTAATTATGGTTACACAAGCTTTGATACCTTCAGTTGGGCATTTTTGTCCCTGTTTCGACTGATGACTCAGGACTTCTGGGAAAATCTATACCAACTG
Seq A exon
ACATTGCGTGCTGCTGGCAAAACCTACATGATATTTTTTGTGCTGGTCATTTTCTTGGGCTCATTCTACCTGATAAACTTGATCCTGGCTGTGGTGGCCATGGCCTATGAGGAGCAGAATCAGGCCACACTGGAGGAGGCTGAACAGAAAGAGGCAGAATTTCAGCAGATGTTGGAGCAACTTAAGAAGCAGCAAGAGGCTGCACAG
Seq C2 exon
CAGGCAGCGGCTACAACAGCCTCAGAACATTCCAGGGAGCCCAGTGCAGCAGGCAGGCTCTCAGATAGCTCTTCAGAAGCCTCTAAGTTGAGTTCGAAGAGTGCTAAAGAAAGACGAAATCGGAGGAAAAAAAGGAAACAGAAAGAGCAGTCTGGAGGAGAAGAGAAAGATGATGATGAATTCCACAAGTCTGAGTCTGAAGACAGCATCAGGAGGAAGGGGTTTCGCTTCTCCATAGAAGGGAATAGACTGACATATGAAAAGAGGTACTCTTCCCCGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064329-'12-14,'12-13,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.246 C2=0.853
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(17.6=100)
A:
PF0052026=Ion_trans=PD(11.6=44.9),PF0293211=Neur_chan_memb=PU(33.3=89.9)
C2:
PF0293211=Neur_chan_memb=FE(50.5=100),PF119333=DUF3451=PU(31.1=73.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGGGCATTTTTGTCCCTGT
R:
GAAACCCCTTCCTCCTGATGC
Band lengths:
292-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: