MmuEX6101746 @ mm10
Exon Skipping
Gene
ENSMUSG00000064329 | Scn1a
Description
sodium channel, voltage-gated, type I, alpha [Source:MGI Symbol;Acc:MGI:98246]
Coordinates
chr2:66325902-66328546:-
Coord C1 exon
chr2:66328405-66328546
Coord A exon
chr2:66327651-66327857
Coord C2 exon
chr2:66325902-66326186
Length
207 bp
Sequences
Splice sites
3' ss Seq
TCTCATATTCTTGTTTCTAGACA
3' ss Score
7.82
5' ss Seq
CAGGTACTC
5' ss Score
7.04
Exon sequences
Seq C1 exon
CCAATGTCCAGAAGGATATATGTGTGTAAAAGCTGGTAGAAACCCTAATTATGGTTACACAAGCTTTGATACCTTCAGTTGGGCATTTTTGTCCCTGTTTCGACTGATGACTCAGGACTTCTGGGAAAATCTATACCAACTG
Seq A exon
ACATTGCGTGCTGCTGGCAAAACCTACATGATATTTTTTGTGCTGGTCATTTTCTTGGGCTCATTCTACCTGATAAACTTGATCCTGGCTGTGGTGGCCATGGCCTATGAGGAGCAGAATCAGGCCACACTGGAGGAGGCTGAACAGAAAGAGGCAGAATTTCAGCAGATGTTGGAGCAACTTAAGAAGCAGCAAGAGGCTGCACAG
Seq C2 exon
CAGGCAGCGGCTACAACAGCCTCAGAACATTCCAGGGAGCCCAGTGCAGCAGGCAGGCTCTCAGATAGCTCTTCAGAAGCCTCTAAGTTGAGTTCGAAGAGTGCTAAAGAAAGACGAAATCGGAGGAAAAAAAGGAAACAGAAAGAGCAGTCTGGAGGAGAAGAGAAAGATGATGATGAATTCCACAAGTCTGAGTCTGAAGACAGCATCAGGAGGAAGGGGTTTCGCTTCTCCATAGAAGGGAATAGACTGACATATGAAAAGAGGTACTCTTCCCCGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064329-'16-21,'16-20,17-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.220 C2=0.855
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(17.6=100),PF0253517=Zip=PU(16.2=43.8)
A:
PF0052026=Ion_trans=PD(11.6=44.9),PF0253517=Zip=FE(52.3=100)
C2:
PF119333=DUF3451=PU(31.1=73.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGGGCATTTTTGTCCCTGT
R:
GAAACCCCTTCCTCCTGATGC
Band lengths:
292-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types