GgaEX6027659 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NRZ0]
Coordinates
chr28:542374-544135:+
Coord C1 exon
chr28:542374-542492
Coord A exon
chr28:543586-543643
Coord C2 exon
chr28:544085-544135
Length
58 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTCTTTCTGTTTTAGCTG
3' ss Score
11.85
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GGTGACCTGATTTCAGTGGCCAAGCAAAGTGGCCTGCCAGTCAGAACAGTGCAGACCTGGTTCCGGCACCGGCGGGCCCAGGACCATCCCAGACTTACAAAGAGGTTCTGTGAGGCGAG
Seq A exon
CTGGAGATTCACGTTCTATTTCACATCGTTCTTCTCTGGGGTGGCTCTCCTATACGAT
Seq C2 exon
AAGCCGTGGGTTTGGGATCACACTGTGTGCTGGCTGAGATATCCACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000406-'2-6,'2-5,3-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(50.0=70.0),PF0379811=TRAM_LAG1_CLN8=PU(2.6=12.5)
A:
PF0379811=TRAM_LAG1_CLN8=FE(10.0=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(21.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGATTTCAGTGGCCAAGCA
R:
CAGTGTGATCCCAAACCCACG
Band lengths:
139-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]