GgaEX6029102 @ galGal4
Exon Skipping
Gene
ENSGALG00000009360 | CAPN2
Description
calpain-2 catalytic subunit precursor [Source:RefSeq peptide;Acc:NP_990411]
Coordinates
chr3:17030161-17031310:-
Coord C1 exon
chr3:17031225-17031310
Coord A exon
chr3:17030495-17030569
Coord C2 exon
chr3:17030161-17030321
Length
75 bp
Sequences
Splice sites
3' ss Seq
AATCTGGGTTTGTCTTTCAGCTG
3' ss Score
8.73
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
Exon sequences
Seq C1 exon
GTGAACTTCCGTGGAAGTATCCAGAAGCTCATCAGAATCCGAAATCCCTGGGGGGAAGTGGAGTGGACAGGGAAATGGAATGACAA
Seq A exon
CTGCCCAAACTGGAGTGGTGTTGACCCAGAGGTGCGGGAGCGGCTGACGAGGAGACATGAGGATGGGGAGTTTTG
Seq C2 exon
GATGGCCTTCAATGACTTCCTGAGGCACTACTCCCGCCTGGAAATCTGCAATCTGACTCCAGACACTCTGGCAAGTGACAGGTACAAGAAGTGGAGCCTGCTGAAGCTGGATGGGAACTGGCGGCGAGGAGCTACTGCGGGGGGCTGCAGGAATTACCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009360-'13-12,'13-11,15-12=AN
Average complexity
A_S
Mappability confidence:
89%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.077 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.3=100)
A:
PF0064816=Peptidase_C2=FE(8.3=100)
C2:
PF0064816=Peptidase_C2=PD(6.3=34.5),PF0106717=Calpain_III=PU(15.4=43.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAATCCGAAATCCCTGGGG
R:
GTTCCCATCCAGCTTCAGCAG
Band lengths:
172-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]