RnoEX6045695 @ rn6
Exon Skipping
Gene
ENSRNOG00000034015 | Capn2
Description
calpain 2 [Source:RGD Symbol;Acc:2268]
Coordinates
chr13:100898291-100900849:-
Coord C1 exon
chr13:100900764-100900849
Coord A exon
chr13:100899541-100899615
Coord C2 exon
chr13:100898291-100898451
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTTATTGCTTTGCTTTTCAGCTG
3' ss Score
9.03
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTTGAAAGCTCAGGAAGCCTGCAGAAATTGATACGTATCAGGAACCCCTGGGGACAAGTGGAGTGGACCGGGAAGTGGAATGACAA
Seq A exon
CTGCCCCAGCTGGAACACGGTTGACCCAGAAGTAAGGGCAAATCTAACAGAACGGCAGGAGGACGGAGAATTCTG
Seq C2 exon
GATGTCCTTCAGTGACTTCCTGAGGCACTACTCTCGTCTAGAAATCTGCAACCTGACCCCGGACACCCTCACCTGTGACTCCTACAAGAAGTGGAAACTCACCAAGATGGATGGGAACTGGAGGCGAGGCTCCACTGCAGGGGGCTGCAGGAATTACCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034015-'13-14,'13-11,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.077 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.3=100)
A:
PF0064816=Peptidase_C2=FE(8.3=100)
C2:
PF0064816=Peptidase_C2=PD(6.3=34.5),PF0106717=Calpain_III=PU(15.4=43.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCGGGAAGTGGAATGACAA
R:
GTAATTCCTGCAGCCCCCTG
Band lengths:
178-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]