GgaEX6029617 @ galGal3
Exon Skipping
Gene
ENSGALG00000010116 | DNAH8
Description
NA
Coordinates
chr3:30688043-30690118:-
Coord C1 exon
chr3:30690014-30690118
Coord A exon
chr3:30688647-30688760
Coord C2 exon
chr3:30688043-30688105
Length
114 bp
Sequences
Splice sites
3' ss Seq
ATCAACCTTCTGTCTTTCAGATC
3' ss Score
11.12
5' ss Seq
ACGGTAACT
5' ss Score
7.53
Exon sequences
Seq C1 exon
GAAGCCTATGCCATTTTAAACACATTTGAAATTGAGGTTACAAAAGAGGAATCAAAAGGAGTTGATACACTCAGATATTCTTTTAATAAATTACAAGCTAAAGCT
Seq A exon
ATCAGTATTCAAGATGAGCTGACTCGAGTTCAGCCCAAATTTAAAAGCAATTTACTGGAATCAGTTGCAATTTTTCGGGAGGATGTGTCAAACTTTGAAACATCATATGAAACG
Seq C2 exon
GAAGGCCCTATGGTTCCAAATATTCCACCTCAGGAAGCTAGTAATAGGCTACAGATCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116-'29-32,'29-31,30-32=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.053 C2=0.429
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCCTATGCCATTTTAAACACA
R:
GATCTGTAGCCTATTACTAGCTTCCT
Band lengths:
162-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]