MmuEX6076593 @ mm9
Exon Skipping
Gene
ENSMUSG00000033826 | Dnahc8
Description
dynein, axonemal, heavy chain 8 [Source:MGI Symbol;Acc:MGI:107714]
Coordinates
chr17:30847447-30850041:+
Coord C1 exon
chr17:30847447-30847551
Coord A exon
chr17:30849218-30849331
Coord C2 exon
chr17:30849979-30850041
Length
114 bp
Sequences
Splice sites
3' ss Seq
AATATTCTTTTTGATTCCAGGTT
3' ss Score
7.42
5' ss Seq
ACGGTAATT
5' ss Score
7.31
Exon sequences
Seq C1 exon
GAAGCCTACGGCATTTTGAACAGATTTGAGGTCAAAGTGACCAAGGAAGAGTCCGAAGGCGTTGACACCCTGAGATACTCATTCAACAAATTACAGAGCAAAGCT
Seq A exon
GTTTCCGTACAAGGTGAACTTGTGAAAGTGCAGCCCAAATTTAAAAGCAACCTGCTCGAGTCGGTGAAGGTCTTCTGTGAGGACGTTATAAACTTTACAGAAGCCTATGAGACG
Seq C2 exon
GAAGGACCCATGGTACCAAATATTCCACCCCAAGAGGCTAGCAACAGGCTGCAGATATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033826-'34-31,'34-30,35-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACGGCATTTTGAACAGATTTGA
R:
TGGAATATCTGCAGCCTGTTGC
Band lengths:
163-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: