RnoEX6062083 @ rn6
Exon Skipping
Gene
ENSRNOG00000000542 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:RGD Symbol;Acc:619986]
Coordinates
chr20:9391815-9394286:+
Coord C1 exon
chr20:9391815-9391919
Coord A exon
chr20:9393314-9393427
Coord C2 exon
chr20:9394224-9394286
Length
114 bp
Sequences
Splice sites
3' ss Seq
AATATTCTTTTTGATTCCAGGTT
3' ss Score
7.42
5' ss Seq
ACGGTAATT
5' ss Score
7.31
Exon sequences
Seq C1 exon
GAGGCCTACGGCATTTTGAACAGATTCGAGGTGGAAGTGACCAAGGAGGAGTCAGAAGGCGTCGACACCCTGAGATACTCGTTCAACAAGTTGCAGAGCAAAGCG
Seq A exon
GTTTCCGTGCAAGATGAACTTGTGCAAGTGCAACCGAAATTCAAAAGCAGCCTGCTTGAGTCGGTGGATGTCTTCCGGGAGGACGTTATAAACTTCACAGAAGCCTATGAGACG
Seq C2 exon
GAAGGACCCATGGTACCAAATATTCCACCCCAAGAGGCTAGCAACAGGCTGCAGATATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000542-'55-59,'55-58,56-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACGGCATTTTGAACAGATTCG
R:
TGGAATATCTGCAGCCTGTTGC
Band lengths:
163-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]