HsaEX6047058 @ hg19
Exon Skipping
Gene
ENSG00000124721 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:2952]
Coordinates
chr6:38795960-38802417:+
Coord C1 exon
chr6:38795960-38796064
Coord A exon
chr6:38800098-38800211
Coord C2 exon
chr6:38802355-38802417
Length
114 bp
Sequences
Splice sites
3' ss Seq
AATATTCTTTTTTATTGTAGGTT
3' ss Score
9.1
5' ss Seq
TTGGTAATT
5' ss Score
5.73
Exon sequences
Seq C1 exon
GAAGCCTATGCTATTTTAAACAGATTTGAAGTTGAAGTAACCAAAGAAGAATCAGAAGCAGTTGATACCTTAAGATATTCTTTCAACAAATTGCAGAGCAAAGCT
Seq A exon
GTTTCAGTACAAGAGGACCTAGTTCAAGTGCAGCCAAAGTTTAAAAGCAATCTACTTGAGTCTGTGGAAGTTTTTCGTGAGGACGTGATAAACTTTGCAGAAGCATATGAATTG
Seq C2 exon
GAAGGACCTATGGTTCCAAATATACCACCCCAAGAAGCTAGCAACAGGCTACAGATATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124721-'31-34,'31-33,32-34=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.095
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGATTTGAAGTTGAAGTAACCAA
R:
CTGAAATATCTGTAGCCTGTTGC
Band lengths:
149-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)