GgaEX6029620 @ galGal3
Exon Skipping
Gene
ENSGALG00000010116 | DNAH8
Description
NA
Coordinates
chr3:30681236-30682205:-
Coord C1 exon
chr3:30682006-30682205
Coord A exon
chr3:30681512-30681665
Coord C2 exon
chr3:30681236-30681399
Length
154 bp
Sequences
Splice sites
3' ss Seq
TTTTTCATCCTTTATTTCAGATA
3' ss Score
10.6
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GATATATGTATTTCTGCTACAAAGGAAAAGGATATAGAAGCCAAACTATCTCAAATAAGTGAAAGTTGGGGAAACCAATTTCTGAGCTTTTCATCATTCAAAGGGAGAGGAGAGCTACTGCTAAAGGGATCTGAATCAGCAGAAATCATAACTTTGATGGAGGACAGTTTAATGATTCTTGGTTCTTTACTGAGCAATAG
Seq A exon
ATACAATGCAGCATTTAAAAAAGATATTCAGAGTTGGATTTCTAAACTAAGTGGCTCTACAGACATAATTGAAGAGTGGTTGGTTGTACAGAACCTCTGGGTTTATCTTGAAGCAGTTTTCGTAGGAGGAGATATTGCAAAACAGTTACCGCAG
Seq C2 exon
GAAGCAAAACGTTTTCAGAATATTGATAAGTCATGGGTAAGAATAATGCAACGAGCTCATGAAAACCCAAATGTAATTGTCTGCTGTGTTGGAGATGAGACTATGGAGCAACTTCTGCCTCACTTACATGAACAACTGGAAGTATGTCAGAAGTCACTTACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116-'36-38,'36-37,37-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(16.0=100)
A:
PF083938=DHC_N2=FE(12.4=100)
C2:
PF083938=DHC_N2=FE(13.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGGAGAGGAGAGCTACTGC
R:
AGTGACTTCTGACATACTTCCAGT
Band lengths:
258-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]