MmuEX6076588 @ mm9
Exon Skipping
Gene
ENSMUSG00000033826 | Dnahc8
Description
dynein, axonemal, heavy chain 8 [Source:MGI Symbol;Acc:MGI:107714]
Coordinates
chr17:30857944-30862190:+
Coord C1 exon
chr17:30857944-30858143
Coord A exon
chr17:30859844-30859997
Coord C2 exon
chr17:30862027-30862190
Length
154 bp
Sequences
Splice sites
3' ss Seq
TTTCTATTCTTTGCTTTTAGATA
3' ss Score
10.46
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GATATCTGCATATCTGCCATTAAGGAGAAGGACATCGAAGCCAAGCTGACACAGGTGATTGAGAACTGGACCTACCAAAACCTGAGTTTTGCAGCGTTTAAGGGCAAAGGCGAGCTCCTGCTCAAAGGAACAGAGTCTGGAGAGATTATCACCTTAATGGAGGATAGCTTGATGGTCCTAGGCTCCTTGCTAAGCAACAG
Seq A exon
ATACAATACCCCGTTTAAAAAAAATATCCAGAATTGGGTCTTTAAATTGTCCACTTCCTCGGATATCATTGAAGAGTGGCTGATAGTCCAGAACCTGTGGGTCTATCTTGAAGCTGTCTTTGTGGGTGGCGACATTGCCAAACAGCTGCCGCAG
Seq C2 exon
GAAGCCAAGCGTTTCCAGAATATTGACAAGTCATGGATAAAGATCATGCAGCGAGCTCATGAGAACCCCAACGTGATCAGCTGCTGTGTCGGGGATGAGACCATGGGGCAGCTCCTGCCCCATTTACACGAGCAGTTGGAAGTCTGTCAGAAGTCCCTCACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033826-'40-37,'40-36,41-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(16.0=100)
A:
PF083938=DHC_N2=FE(12.3=100)
C2:
PF083938=DHC_N2=FE(13.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGACATCGAAGCCAAGCTG
R:
GTTGGGGTTCTCATGAGCTCG
Band lengths:
245-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: