HsaEX6047054 @ hg19
Exon Skipping
Gene
ENSG00000124721 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:2952]
Coordinates
chr6:38813350-38818190:+
Coord C1 exon
chr6:38813350-38813549
Coord A exon
chr6:38816424-38816577
Coord C2 exon
chr6:38818027-38818190
Length
154 bp
Sequences
Splice sites
3' ss Seq
TTTCCGTTCTTACCTTTTAGATA
3' ss Score
12.35
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GATATTTGCATATCTGCCATTAAGGAGAAGGATATCGAAGCCAAGCTGACTCAGGTGATTGAGAATTGGACCAACCAAAATCTGAGTTTTGCAGCATTTAAGGGAAAAGGAGAGCTCCTGCTCAAAGGAACCGAATCGGGAGAAATTATCACTTTGATGGAGGATAGTTTAATGGTCTTAGGGTCTTTACTCAGCAACAG
Seq A exon
ATACAATGCTCCATTTAAAAAAAATATCCAGAATTGGGTGTATAAATTGTCCACTTCCTCAGATATAATTGAAGAGTGGCTCGTAGTACAGAACCTTTGGGTTTATCTTGAAGCCGTCTTTGTAGGTGGAGATATTGCCAAACAGCTGCCTCAG
Seq C2 exon
GAAGCAAAACGTTTTCAGAATATTGACAAGTCTTGGATAAAAATAATGCAGCGAGCTCATGAGAATCCCAATGTGATTAATTGCTGTGTTGGAGATGAAACCATGGGACAACTTTTACCTCATTTACATGAGCAGTTGGAAGTATGTCAGAAGTCACTCACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124721-'37-40,'37-39,38-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(16.0=100)
A:
PF083938=DHC_N2=FE(12.3=100)
C2:
PF083938=DHC_N2=FE(13.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATATCGAAGCCAAGCTGAC
R:
TGGGATTCTCATGAGCTCGCT
Band lengths:
242-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)