RnoEX0028612 @ rn6
Exon Skipping
Gene
ENSRNOG00000000542 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:RGD Symbol;Acc:619986]
Coordinates
chr20:9402040-9405828:+
Coord C1 exon
chr20:9402040-9402239
Coord A exon
chr20:9403541-9403694
Coord C2 exon
chr20:9405665-9405828
Length
154 bp
Sequences
Splice sites
3' ss Seq
TTCCTATTCTCCGCTTTCAGATA
3' ss Score
11.16
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GACATCTGCATATCCGCCATTAAGGAGAAGGACATTGAAGCCAAGATGACTCAGGTGATTGAGAACTGGACCAACCAAAACCTGAGTTTTTCAGCGTTTAAGGGCAAAGGCGAGCTCCTGCTCAAAGGAACCGAGTCTGGAGAGATTATCACCTTGATGGAGGATAGCTTGATGGTCCTAGGTTCCTTGCTAAGCAACAG
Seq A exon
ATATAATACCCCGTTTAAGAAAACTATCCAGAATTGGGTCTATAAACTGTCCACCTCTTCGGATATCATAGAAGAGTGGCTGGTGGTCCAGAACCTGTGGGTCTACCTTGAAGCCGTCTTTGTGGGTGGCGACATTGCCAAACAGCTGCCCCAG
Seq C2 exon
GAAGCCAAACGTTTCCAGAATATCGACAAGTCGTGGGTAAAAATCATGCAGCGAGCTCACGAGAACCCCAACGTGATCAGCTGCTGTGTGGGGGATGAGACCATGGGGCAGCTCCTGCCTCATTTGCACGAGCAGTTGGAGGTCTGTCAGAAGTCCCTCACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000542-'61-65,'61-64,62-65
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(16.0=100)
A:
PF083938=DHC_N2=FE(12.3=100)
C2:
PF083938=DHC_N2=FE(13.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTAAGGGCAAAGGCGAGCTC
R:
TCTGACAGACCTCCAACTGCT
Band lengths:
255-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]