GgaEX6029637 @ galGal4
Exon Skipping
Gene
ENSGALG00000010116 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr3:28783020-28784605:-
Coord C1 exon
chr3:28784392-28784605
Coord A exon
chr3:28783780-28783889
Coord C2 exon
chr3:28783020-28783183
Length
110 bp
Sequences
Splice sites
3' ss Seq
ATTCAATTTTATCTTTTCAGGTG
3' ss Score
10.02
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
ATAACAAATGAAATTGTTCGTCAAATGATGGAAATGAAAGGAATGTACAACTTAGATAAACCTGGAGACTTCACTACTATTGTAGATGTACAAATAATAGCGGCAATGATACATCCAGGAGGAGGCCGTAACGATATTCCACAGCGTTTAAAAAGACAGTTTTGTATATTCAATTGTACATTACCATCCAATGCATCCATAGACAAAATCTTTG
Seq A exon
GTGTTATTGGATGTGGATATTTTCATTCATGTAGAAACTTTAGTTCTGAAGTATCTGATATGGTGAAAAAATTGATCCCAACAGGTAGAATATTGTGGCAATGGACAAAG
Seq C2 exon
ACAAAGATGCTGCCTACACCATCTAAATTCCACTATATCTTCAACCTTCGAGACCTTTCTAGAATTTGGCAAGGGATGTTAACTATAAAGGCAGAAGAATGCACAAACACAACTATCCTTCTAGCACTTTTTAAACATGAATGTACTAGAGTAATTGCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116-'38-38,'38-37,39-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(26.0=100)
A:
PF127752=AAA_7=FE(13.2=100)
C2:
PF127752=AAA_7=PD(16.8=83.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGGCAATGATACATCCAGG
R:
AGTGCTAGAAGGATAGTTGTGTTTGT
Band lengths:
244-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]