RnoEX6062068 @ rn6
Exon Skipping
Gene
ENSRNOG00000000542 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:RGD Symbol;Acc:619986]
Coordinates
chr20:9436430-9439741:+
Coord C1 exon
chr20:9436430-9436643
Coord A exon
chr20:9437922-9438031
Coord C2 exon
chr20:9439578-9439741
Length
110 bp
Sequences
Splice sites
3' ss Seq
CCTCCCGACCTTCTCCCCAGGAA
3' ss Score
10.56
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
ATCACCAACGAGATCGTGCGTCAGATGATGGAGATGGAGGGAATGTACAGCCTGGACAAACCCGGAGACTTCACCACCATTGTGGACGTGCAGCTCATAGCTGCCATGATTCACCCCGGAGGGGGGCGGAACGACATCCCACAGCGCTTAAAAAGACAGTTCACTGTGTTCAACTGCACGCTGCCCTCCAATACGTCTATCGACAAAATCTTTG
Seq A exon
GAATTATCGGCTGTGGGTACTTCGACCCGTGTAGAAAGTTCAGGCCCGAGATCTGTGACATGATTGGAAATTTGGTGTCAGTCGGCCGAGTGCTGTGGCAGTGGACCAAG
Seq C2 exon
GTGAAGATGCTCCCCACGCCTTCTAAGTTTCATTACATCTTCAACCTCCGGGACCTCTCCAGAATCTGGCAGGGGATGTTAACGATTAAAGCTGAAGAGTGCAAAACCATCCCCATTCTCATGGCTCTCTTCAAGCACGAGTGTAACAGAGTGATCGCGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000542-'88-95,'88-94,89-95=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(26.0=100)
A:
PF127752=AAA_7=FE(13.2=100)
C2:
PF127752=AAA_7=PD(16.8=83.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAACCCGGAGACTTCACC
R:
TCGTTAACATCCCCTGCCAGA
Band lengths:
245-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]