MmuEX0015105 @ mm9
Exon Skipping
Gene
ENSMUSG00000033826 | Dnahc8
Description
dynein, axonemal, heavy chain 8 [Source:MGI Symbol;Acc:MGI:107714]
Coordinates
chr17:30891919-30895353:+
Coord C1 exon
chr17:30891919-30892132
Coord A exon
chr17:30893648-30893757
Coord C2 exon
chr17:30895190-30895353
Length
110 bp
Sequences
Splice sites
3' ss Seq
CCATCTGATCCTTTCCCCAGGAA
3' ss Score
10.53
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
ATCACCAATGAGATCGTGCGTCAGATGATGGAGATGGAGGGAATGTACAGCTTGGACAAGCCTGGAGACTTCACCACCATTGTCGATGTGCAGCTCATAGCAGCCATGATCCATCCTGGAGGAGGGCGGAACGACATCCCACAGCGCTTAAAAAGGCAGTTTACCGTGTTCAACTGCACGCTGCCTTCCAACACGTCTATTGACAAAATCTTCG
Seq A exon
GAATTATCGGCTGTGGATACTTTGACCCGTGTAGAAAGTTCAGACCCGAAATATGTGACATGGTTGGGAATTTGGTCTCAGTCAGCCGCGTACTGTGGCAGTGGACAAAG
Seq C2 exon
GTAAAGATGCTACCCACGCCTTCAAAGTTTCATTACATCTTCAACCTCCGGGACCTTTCGAGAATCTGGCAGGGGATGTTAACCGTAAAAGCAGAAGAGTGCAGCTCGATCCCCATTCTCCTGTCGCTCTTCAAGCACGAGTGTAACAGAGTGATCGCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033826_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(26.0=100)
A:
PF127752=AAA_7=FE(13.2=100)
C2:
PF127752=AAA_7=PD(16.8=83.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACAAGCCTGGAGACTTCA
R:
TACGGTTAACATCCCCTGCCA
Band lengths:
249-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: