GgaEX6029654 @ galGal4
Exon Skipping
Gene
ENSGALG00000010116 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr3:28761353-28763528:-
Coord C1 exon
chr3:28763276-28763528
Coord A exon
chr3:28762983-28763173
Coord C2 exon
chr3:28761353-28761474
Length
191 bp
Sequences
Splice sites
3' ss Seq
CTTTTGTTTTCATGATTCAGATC
3' ss Score
8.48
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GCTCACTGGTAGATGATGAATCCCTGATTGGAGTTCTGCAAACAACTAAACAAACAGCTGCCGAAGTAACTAAAAAGTTGTCCGTAGCAGCAGAAACTGAAGTGAAGATTAACTCTGCTCAGGAGGATTATCGACCTGCTGCTACGCGTGGGAGCATTCTTTACTTTCTTATTACAGAAATGAGCATGGTCAATAATATGTATCAGACTTCACTGGCTCAGTTCTTAAAGTTATTTGATCAATCCATGGCCAG
Seq A exon
ATCTGAGAAGTCTCCCGTATCCCATAAAAGAATCTCAAATATTATTGAGTACCTTACCTATGAAATTTACACATATTCTGTTAGAGGCTTATATGAAAACCACAAGTTCCTTTTTACCCTTCTCCTGACGTTGAAAATCGATCTTGAGAGAGAACATGTGAAAAACACAGAGTTCCAGACATTCATTAGAG
Seq C2 exon
GAGGTGCAGCACTGGATCTAAAGGCTTGCCCACCTAAACCATTCCGCTGGATTCTTGACATGATGTGGCTAAACTTAGTGGAAATGAGTAAACTTCCACAGTTTGCAAAAATTTTGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116-'61-61,'61-60,62-61=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PD(10.0=27.1)
A:
NO
C2:
PF0302810=Dynein_heavy=PU(4.9=82.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAACAGCTGCCGAAGTAACT
R:
GGTTTAGGTGGGCAAGCCTTT
Band lengths:
244-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]