RnoEX6062053 @ rn6
Exon Skipping
Gene
ENSRNOG00000000542 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:RGD Symbol;Acc:619986]
Coordinates
chr20:9482905-9487411:+
Coord C1 exon
chr20:9482905-9483157
Coord A exon
chr20:9483716-9483906
Coord C2 exon
chr20:9487290-9487411
Length
191 bp
Sequences
Splice sites
3' ss Seq
ATTTTAAAACTGAATTGCAGATC
3' ss Score
6.29
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTTCCCTGGTGGACGACGAATCTCTCATCGGCGTCCTGCGCATCACCAAACAGACAGCTGCGGAAGTGAGTGAAAAGCTCCACGTGGCGGCGGAAACGGAGATCAAGATCAACACAGCTCAGGAGGAGTTCCGGCCTGCGGCCACGCGAGGCAGCATCCTTTACTTCCTCATCACAGAGATGAGCATGGTCAACATCATGTACCAAACCTCACTGGCCCAGTTCCTGAAGCTGTTTGACCAGTCTATGGCCAG
Seq A exon
ATCCGAAAAGTCTCCGCTCCCTCAAAAAAGAATTACAAATATCATCGAGTACCTGACGTACGAGGTTTTCACCTACTCAGTGAGAGGCCTGTATGAAAACCACAAGTTCCTCTTCGCTCTCCTCATGACACTGAAGATCGATCTCCAGAGGGGGACAGTGAAGCACAAAGAGTTTCAGGCTCTGATTAAAG
Seq C2 exon
GTGGAGCAGCCCTGGACCTGAAGGCGTGCCCCCCCAAGCCCTTCCGCTGGATCCTGGACATGACGTGGCTGAACCTTGTGGAGCTCAGTAAGCTCCCGCAGTTTGCAGAAATTATGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000542-'120-129,'120-128,121-129=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PD(10.2=27.1)
A:
NO
C2:
PF0302810=Dynein_heavy=PU(4.9=82.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTGAAAAGCTCCACGTGG
R:
CACGTCATGTCCAGGATCCAG
Band lengths:
254-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]