MmuEX6076552 @ mm9
Exon Skipping
Gene
ENSMUSG00000033826 | Dnahc8
Description
dynein, axonemal, heavy chain 8 [Source:MGI Symbol;Acc:MGI:107714]
Coordinates
chr17:30940008-30944271:+
Coord C1 exon
chr17:30940008-30940260
Coord A exon
chr17:30940938-30941128
Coord C2 exon
chr17:30944150-30944271
Length
191 bp
Sequences
Splice sites
3' ss Seq
ATTTTAAAACTGGATTGCAGGTC
3' ss Score
5.3
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTTCCCTGGTGGACGACGAGTCTCTCATCGGCGTCCTGCGCATCACCAAACAGACAGCTGCGGAAGTGAGCGAAAAGCTCCACGTGGCTGCGGAAACGGAGATCAAGATCAATACAGCTCAGGAGGAGTTCCGGCCAGCGGCCACGCGAGGCAGCATCCTTTACTTCCTCATCACAGAGATGAGCATGGTCAACATCATGTACCAAACCTCCCTGGCCCAGTTCTTGAAGTTATTTGACCAGTCCATGGCCAG
Seq A exon
GTCTGAAAAGTCTCCGCTACCTCAAAAAAGAATTACAAACATTATTGAGTACCTGACATACGAGGTCTTCACCTATTCTGTGAGAGGCCTGTACGAAAACCACAAATTCCTCTTCGTTCTCCTCATGACACTGAAGATCGATCTCCAGAGAGGGACAGTGAAGCACAAAGAGTTTCAGGCTCTGATTAAAG
Seq C2 exon
GTGGAGCAGCCCTGGACCTGAAGGCATGCCCCCCCAAGCCCTTCCGCTGGATCCTGGACATGACGTGGCTGAACCTTGTGGAGCTCAGTAAGCTCCCCCAGTTTGCAGAAATTATGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033826-'82-80,'82-79,83-80=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PD(10.0=27.1)
A:
NO
C2:
PF0302810=Dynein_heavy=PU(4.9=82.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACAGCTCAGGAGGAGTTCC
R:
ATTTCTGCAAACTGGGGGAGC
Band lengths:
254-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: