GgaEX6031925 @ galGal3
Exon Skipping
Gene
ENSGALG00000016289 | DST
Description
NA
Coordinates
chr3:89810166-89811260:+
Coord C1 exon
chr3:89810166-89810328
Coord A exon
chr3:89810981-89811064
Coord C2 exon
chr3:89811153-89811260
Length
84 bp
Sequences
Splice sites
3' ss Seq
TGTGGATTCATATTTTACAGATG
3' ss Score
8.03
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
GTTACGTGACTTAGAAGGTATTAATAAATCTCTGAAGTACTACAAAGATACTTACGATTCATTGGACACTTGGATTCAACAAGTGGAAGATACTCAGAGGAAGATTCAAGAAATCCGTCCTGAAAATAGCAAAGCATTGGCTAAACAGCTGAACCAACATAAG
Seq A exon
ATGCTGGTTTCTGAGATTGAAATGAAACAAAGCAAAATAGACGAATGCCAGAAATATGCAGAACAGTACTCAGCTGCTGTGAAG
Seq C2 exon
GACTACGAGTTGCAGACTATGACTTACAGAGCTATGGTTGATTCCCAACAAAAATCTCCAGTGAAACGACGAAGAATGCAAAGCTCATCAGACTTCATTATTCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016289-'32-32,'32-31,33-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.218 A=0.000 C2=0.361
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGTGGAAGATACTCAGAGGA
R:
TGAGCTTTGCATTCTTCGTCGT
Band lengths:
172-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]