RnoEX0030017 @ rn6
Exon Skipping
Gene
ENSRNOG00000012207 | Dst
Description
dystonin [Source:RGD Symbol;Acc:1306566]
Coordinates
chr9:38036380-38038197:-
Coord C1 exon
chr9:38038035-38038197
Coord A exon
chr9:38037291-38037374
Coord C2 exon
chr9:38036380-38036487
Length
84 bp
Sequences
Splice sites
3' ss Seq
TCTCTAAACTGTGTTCGCAGATG
3' ss Score
8.58
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GCTGCGGGACTTAGAAGGGATCGGGAAGTCCCTGAAGCACTACAGGGACTCCTACCACCCTCTAGATGACTGGATCCAGCAAATCGAAACGACCCAGAGAAAAATTCAGGAAAATCAGCCAGAAAACAGCAAAGCTCTGGCCGTACAGCTGAACCAACAGAAG
Seq A exon
ATGCTGGTATCTGAAATAGAGGTGAAGCAGAGCAAAATGGACGAGTGTCAGAAATACTCGGAGCAGTACTCAGCTGCCGTCAAG
Seq C2 exon
GACTATGAATTGCAAACAATGACCTACAGGGCCATGGTGGATTCCCAGCAGAAGTCACCAATGAAGCGTCGGCGGATACAGAGCTCGGCGGACCTCATTATTCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012207-'47-41,'47-40,48-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.327 A=0.000 C2=0.414
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAGGGACTCCTACCACCC
R:
GACTTCTGCTGGGAATCCACC
Band lengths:
180-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]