GgaEX6031925 @ galGal4
Exon Skipping
Gene
ENSGALG00000016289 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr3:86418097-86419191:+
Coord C1 exon
chr3:86418097-86418259
Coord A exon
chr3:86418912-86418995
Coord C2 exon
chr3:86419084-86419191
Length
84 bp
Sequences
Splice sites
3' ss Seq
TGTGGATTCATATTTTACAGATG
3' ss Score
8.03
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
GTTACGTGACTTAGAAGGTATTAATAAATCTCTGAAGTACTACAAAGATACTTACGATTCATTGGACACTTGGATTCAACAAGTGGAAGATACTCAGAGGAAGATTCAAGAAATCCGTCCTGAAAATAGCAAAGCATTGGCTAAACAGCTGAACCAACATAAG
Seq A exon
ATGCTGGTTTCTGAGATTGAAATGAAACAAAGCAAAATAGACGAATGCCAGAAATATGCAGAACAGTACTCAGCTGCTGTGAAG
Seq C2 exon
GACTACGAGTTGCAGACTATGACTTACAGAGCTATGGTTGATTCCCAACAAAAATCTCCAGTGAAACGACGAAGAATGCAAAGCTCATCAGACTTCATTATTCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016289-'42-43,'42-42,43-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.216 A=0.000 C2=0.340
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PU(52.9=83.6)
A:
PF0043516=Spectrin=FE(31.0=100)
C2:
PF0043516=Spectrin=PD(12.6=30.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGTGGAAGATACTCAGAGGA
R:
TGAGCTTTGCATTCTTCGTCGT
Band lengths:
172-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]