GgaEX6035326 @ galGal3
Exon Skipping
Gene
ENSGALG00000013571 | F1NUN5_CHICK
Description
NA
Coordinates
chr4:63219729-63223832:+
Coord C1 exon
chr4:63219729-63219838
Coord A exon
chr4:63222803-63222962
Coord C2 exon
chr4:63223723-63223832
Length
160 bp
Sequences
Splice sites
3' ss Seq
TCTTCTCTTGTTTTATACAGATT
3' ss Score
9.57
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
Exon sequences
Seq C1 exon
TGAAAAATGCTTCTTGAAACATACCAGTTTAGGAACTCCAACCAGCATAAGGGTGCTTGATGAGGTTGTGTCTGGATTCTCCTTAAAGCCATGTCAGCTTTCTGAATTAG
Seq A exon
ATTGTCAAATGGACATTTTTGAACACGAAGAATTTTCAGGAACGAATGTCACAAGTTTTTTCACTCCAGACACTTTTGCCTGCCAAACTATTTGTACTTATTTTCCAAACTGCTTGTTCTTTACATTCTTCACCAAGGAATGGCAAATAGAATCCCAAAG
Seq C2 exon
AAATCTTTGCCTCCTGAAAACATCAAGAAGTGGAATACCAGAGGCACTTACGTTACGAGAAAATGCTATTTCAGGTTTTGGTCTCCTAAATTGCAGAAGACACTTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013571-'4-6,'4-5,5-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(36.9=81.6)
A:
PF0002421=PAN_1=PU(61.9=96.3)
C2:
PF0002421=PAN_1=PD(36.9=81.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAAATGCTTCTTGAAACATACCA
R:
CAGGAAAGTGTCTTCTGCAATT
Band lengths:
220-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]