MmuEX6035493 @ mm10
Exon Skipping
Gene
ENSMUSG00000031645 | F11
Description
coagulation factor XI [Source:MGI Symbol;Acc:MGI:99481]
Coordinates
chr8:45249011-45250166:-
Coord C1 exon
chr8:45250057-45250166
Coord A exon
chr8:45249505-45249664
Coord C2 exon
chr8:45249011-45249120
Length
160 bp
Sequences
Splice sites
3' ss Seq
CAGTTTCTTCCCTTGGACAGCTT
3' ss Score
6.14
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
TAAAATGTGTCTTTTGAAGTACACCCGAACGGGGACGCCAACCACAATAACGAAGCTCAATGGCGTGGTATCTGGATTTTCACTGAAGTCCTGTGGACTTTCAAACTTGG
Seq A exon
CTTGTATCAGGGACATTTTCCCTAACACGGTGCTGGCAGACCTTAACATTGACAGCGTGGTGGCCCCAGATGCTTTTGTCTGTCGTCGCATCTGCACGCATCACCCCACTTGTTTGTTCTTCACATTCTTTTCCCAAGCATGGCCGAAAGAATCTCAGAG
Seq C2 exon
ACATCTTTGTCTCCTTAAAACCTCTGAAAGTGGATTACCAAGCACACGCATTACAAAGAGCCACGCCCTTTCGGGCTTCAGTCTCCAGCACTGCAGGCACAGTGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031645-'11-8,'11-7,12-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(36.9=81.6)
A:
PF0002421=PAN_1=PU(61.9=96.3)
C2:
PF0002421=PAN_1=PD(36.9=81.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGTGTCTTTTGAAGTACACCCG
R:
CTGGGACACTGTGCCTGC
Band lengths:
218-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types