RnoEX6055611 @ rn6
Exon Skipping
Gene
ENSRNOG00000013684 | F11
Description
coagulation factor XI [Source:RGD Symbol;Acc:1309364]
Coordinates
chr16:50194238-50195323:+
Coord C1 exon
chr16:50194238-50194347
Coord A exon
chr16:50194668-50194827
Coord C2 exon
chr16:50195214-50195323
Length
160 bp
Sequences
Splice sites
3' ss Seq
CAGTTTCTCTCATCGTACAGCTT
3' ss Score
6.59
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
TAAAATGTGTCTTTTGAAGTACACCCAAATGGGGACGCCAACTTCAATAACAAAGCTCGACAGTGTGGTATCTGGATTTTCACTGAAGTCCTGTGGGCTTTCGAACCTGG
Seq A exon
CTTGTATCAGGGACATTTTCCCGAACACCGTGCTTGCAGACCTTAACATTGACAGCGTGTTGGCCCCAGATGCTTTTGTCTGTCGTCGCATTTGCACGCATCACCCCACGTGCCTGTTTTTTACATTCTTTACCCAAGCGTGGCCAAAAGAATCCCAGAG
Seq C2 exon
ACATCTTTGCCTCCTTAAAACATCTGAAAGCGGATTTCCAAGCACACGCATCACAAAGAGCAACGCCCTTTCCGGGTTCAGTCTCCAGCACTGCAGGCACAGCATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013684-'9-13,'9-12,10-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(36.9=81.6)
A:
PF0002421=PAN_1=PU(61.9=96.3)
C2:
PF0002421=PAN_1=PD(36.9=81.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGTGTCTTTTGAAGTACACCCA
R:
CTGGGATGCTGTGCCTGC
Band lengths:
218-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]