GgaEX6036054 @ galGal3
Exon Skipping
Gene
ENSGALG00000015623 | E1BZN8_CHICK
Description
NA
Coordinates
chr4:84977718-84984103:-
Coord C1 exon
chr4:84984049-84984103
Coord A exon
chr4:84982078-84982174
Coord C2 exon
chr4:84977718-84977796
Length
97 bp
Sequences
Splice sites
3' ss Seq
TTTTTATTCTTGTATTGCAGTGT
3' ss Score
9.14
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
CACCACAAATCTGGGGCAGGAAGAGGCTCAAAACACGAGTTCACTCGCCTACAAG
Seq A exon
TGTTTACAGAGGATGGAAATTTATGCACATTTCCTTTCCGGTATGGTGGAAGGCTTTATCACTCGTGTTTATCAAATCTGTTTTCCCGAAAGAAATG
Seq C2 exon
GTGCTCAACAACACGTAACTACGACCGGGACAGGAAATGGGGGTACTGCACGCTGCTATCCACAGAGCACTCAGGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015623-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.316 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0004014=fn2=PU(58.5=72.7)
C2:
PF0004014=fn2=PD(39.0=59.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAAATCTGGGGCAGGAAG
R:
CCTGAGTGCTCTGTGGATAGC
Band lengths:
128-225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]