GgaEX6036054 @ galGal4
Exon Skipping
Gene
ENSGALG00000015623 | HGFAC
Description
HGF activator [Source:HGNC Symbol;Acc:HGNC:4894]
Coordinates
chr4:81527974-81534354:-
Coord C1 exon
chr4:81534300-81534354
Coord A exon
chr4:81532329-81532425
Coord C2 exon
chr4:81527974-81528047
Length
97 bp
Sequences
Splice sites
3' ss Seq
TTTTTATTCTTGTATTGCAGTGT
3' ss Score
9.14
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
CACCACAAATCTGGGGCAGGAAGAGGCTCAAAACACGAGTTCACTCGCCTACAAG
Seq A exon
TGTTTACAGAGGATGGAAATTTATGCACATTTCCTTTCCGGTATGGTGGAAGGCTTTATCACTCGTGTTTATCAAATCTGTTTTCCCGAAAGAAATG
Seq C2 exon
GTGCTCAACAACACGTAACTACGACCGGGACAGGAAATGGGGGTACTGCACGCTGCTATCCACAGAGCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015623-'1-3,'1-1,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0004014=fn2=PU(58.5=72.7)
C2:
PF0004014=fn2=PD(39.0=61.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAAATCTGGGGCAGGAAG
R:
CTGAGTGCTCTGTGGATAGCA
Band lengths:
127-224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]