MmuEX6017195 @ mm9
Exon Skipping
Gene
ENSMUSG00000029102 | Hgfac
Description
hepatocyte growth factor activator [Source:MGI Symbol;Acc:MGI:1859281]
Coordinates
chr5:35384939-35385583:+
Coord C1 exon
chr5:35384939-35385113
Coord A exon
chr5:35385215-35385311
Coord C2 exon
chr5:35385504-35385583
Length
97 bp
Sequences
Splice sites
3' ss Seq
TCCCTGACACCCCTCCACAGTGC
3' ss Score
7.13
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
AACCACACAGAGCCCCCAGGACCTAACGTTACAGCCACCCCCGTGACCCCCACGATCCCTGTGATCTCTGGGAATGTCAGCACCTCAACAGAAAGTGCTCCAGCAGCAGAGACTGAGGGACCCCAAAGTGAGAGGTACCCTCCTCCCTCCAGCAGCAGCCCCCCTGGGGGCCAAG
Seq A exon
TGCTCACCGAGTCTGGGCAGCCGTGCAGGTTCCCTTTCCGCTACGGTGGCCGCATGCTGCACTCCTGTACCTCTGAGGGAAGTGCCTACAGGAAGTG
Seq C2 exon
GTGCGCTACAACACACAACTATGACCGAGACCGGGCCTGGGGCTACTGTGCAGAGGTGACCCTGCCTGTGGAAGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029102-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.061 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0004014=fn2=PU(58.5=72.7)
C2:
PF0004014=fn2=PD(39.0=57.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGGAATGTCAGCACCTCA
R:
AGGGTCACCTCTGCACAGTAG
Band lengths:
172-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: