BtaEX0013600 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018872 | F12
Description
coagulation factor XII (Hageman factor) [Source:HGNC Symbol;Acc:HGNC:3530]
Coordinates
chr7:40261716-40265977:-
Coord C1 exon
chr7:40265920-40265977
Coord A exon
chr7:40262560-40262659
Coord C2 exon
chr7:40261716-40261786
Length
100 bp
Sequences
Splice sites
3' ss Seq
AGAGTGTGTTATCCCTGCAGTTC
3' ss Score
7.17
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
ACTCCACCTTGGAAGGGCCCCAAGAAGCATAAGCTCACAGAGAGTGAGCACACAGTGG
Seq A exon
TTCTCACTGTCACCGGGGAACCCTGCCACTTCCCCTTCCAGTACCACCGGCAGCTGCATCATAAATGCACCCACAGAGGCCGGCCAGGCCCCCGACCTTG
Seq C2 exon
GTGTGCTACTACCCCCAACTTTGAGAAGGACCAACGATGGGCATACTGCCTGGAGCCCAAGAAAGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018872_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.650 A=0.000 C2=0.040
Domain overlap (PFAM):
C1:
NO
A:
PF0004014=fn2=PU(59.5=73.5)
C2:
PF0004014=fn2=PD(38.1=64.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGGCCCCAAGAAGCATAAG
R:
TTCACTTTCTTGGGCTCCAGG
Band lengths:
115-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development