MmuEX6058591 @ mm10
Exon Skipping
Gene
ENSMUSG00000021492 | F12
Description
coagulation factor XII (Hageman factor) [Source:MGI Symbol;Acc:MGI:1891012]
Coordinates
chr13:55422406-55426360:-
Coord C1 exon
chr13:55426303-55426360
Coord A exon
chr13:55422673-55422772
Coord C2 exon
chr13:55422406-55422476
Length
100 bp
Sequences
Splice sites
3' ss Seq
GAGGTGTGGTGTTCCTACAGTTC
3' ss Score
6.69
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GCTCCACCATGGAAAGACTCCAAGAAATTTAAGGACGCACCTGATGGGCCCACAGTGG
Seq A exon
TTCTCACTGTGGATGGGAGGCTCTGCCATTTTCCCTTTCAGTACCACCGTCAGCTACACCACAAATGCATCCACAAAAGGCGGCCAGGCTCCCGCCCCTG
Seq C2 exon
GTGTGCTACCACCCCCAACTTTGATGAAGATCAGCAATGGGGATACTGCTTGGAGCCCAAGAAAGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021492_MULTIEX1-1/10=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.275 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(5.7=30.0)
A:
PF0004014=fn2=PU(59.5=73.5)
C2:
PF0004014=fn2=PD(38.1=64.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTCCAAGAAATTTAAGGACGCA
R:
CTTTCACTTTCTTGGGCTCCA
Band lengths:
115-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types