RnoEX0033747 @ rn6
Exon Skipping
Gene
ENSRNOG00000015139 | F12
Description
coagulation factor XII [Source:RGD Symbol;Acc:1359175]
Coordinates
chr17:9737203-9739811:+
Coord C1 exon
chr17:9737203-9737257
Coord A exon
chr17:9739456-9739555
Coord C2 exon
chr17:9739741-9739811
Length
100 bp
Sequences
Splice sites
3' ss Seq
GGTGTGTGCTGTTCCTACAGTTC
3' ss Score
7.73
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GCGCCACCGTGGAAGTCCAAGGAGTTCAAGGACGGAGCTGGCGATCCCTCTGTGG
Seq A exon
TTCTCACTGTGGACGGGAAGCTCTGCCACTTTCCCTTTCAGTACCACCGTCGCCTGTACCACAAATGCATCCACAAAGGACAGCCAGGCTCCAGGCCCTG
Seq C2 exon
GTGTGCTACCACCCCCAACTTTGACGAGGACCAGCAATGGGGATACTGCTTGGAGCCCAAGAAAGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015139_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0004014=fn2=PU(59.5=73.5)
C2:
PF0004014=fn2=PD(38.1=64.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCACCGTGGAAGTCCA
R:
CTTTCACTTTCTTGGGCTCCA
Band lengths:
125-225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]