MmuEX6058591 @ mm9
Exon Skipping
Gene
ENSMUSG00000021492 | F12
Description
coagulation factor XII (Hageman factor) [Source:MGI Symbol;Acc:MGI:1891012]
Coordinates
chr13:55523767-55527721:-
Coord C1 exon
chr13:55527664-55527721
Coord A exon
chr13:55524034-55524133
Coord C2 exon
chr13:55523767-55523837
Length
100 bp
Sequences
Splice sites
3' ss Seq
GAGGTGTGGTGTTCCTACAGTTC
3' ss Score
6.69
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GCTCCACCATGGAAAGACTCCAAGAAATTTAAGGACGCACCTGATGGGCCCACAGTGG
Seq A exon
TTCTCACTGTGGATGGGAGGCTCTGCCATTTTCCCTTTCAGTACCACCGTCAGCTACACCACAAATGCATCCACAAAAGGCGGCCAGGCTCCCGCCCCTG
Seq C2 exon
GTGTGCTACCACCCCCAACTTTGATGAAGATCAGCAATGGGGATACTGCTTGGAGCCCAAGAAAGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021492-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(5.7=30.0)
A:
PF0004014=fn2=PU(59.5=73.5)
C2:
PF0004014=fn2=PD(38.1=64.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTCCAAGAAATTTAAGGACGCA
R:
CTTTCACTTTCTTGGGCTCCA
Band lengths:
115-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: