HsaEX6101418 @ hg38
Exon Skipping
Gene
ENSG00000131187 | F12
Description
coagulation factor XII [Source:HGNC Symbol;Acc:HGNC:3530]
Coordinates
chr5:177405735-177409103:-
Coord C1 exon
chr5:177409046-177409103
Coord A exon
chr5:177405962-177406061
Coord C2 exon
chr5:177405735-177405805
Length
100 bp
Sequences
Splice sites
3' ss Seq
AGAGTGTGTTGTCCCTGCAGTTC
3' ss Score
7.88
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
ATTCCACCTTGGGAAGCCCCCAAGGAGCATAAGTACAAAGCTGAAGAGCACACAGTCG
Seq A exon
TTCTCACTGTCACCGGGGAGCCCTGCCACTTCCCCTTCCAGTACCACCGGCAGCTGTACCACAAATGTACCCACAAGGGCCGGCCAGGCCCTCAGCCCTG
Seq C2 exon
GTGTGCTACCACCCCCAACTTTGATCAGGACCAGCGATGGGGATACTGTTTGGAGCCCAAGAAAGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131187-'2-4,'2-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.029 C2=0.100
Domain overlap (PFAM):
C1:
NO
A:
PF0004014=fn2=PU(59.5=73.5)
C2:
PF0004014=fn2=PD(38.1=64.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCACCTTGGGAAGCCC
R:
ACTTTCTTGGGCTCCAAACAGT
Band lengths:
124-224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains