RnoEX6042842 @ rn6
Exon Skipping
Gene
ENSRNOG00000009572 | Hgfac
Description
HGF activator [Source:RGD Symbol;Acc:70909]
Coordinates
chr14:80972126-80972780:-
Coord C1 exon
chr14:80972600-80972780
Coord A exon
chr14:80972395-80972491
Coord C2 exon
chr14:80972126-80972205
Length
97 bp
Sequences
Splice sites
3' ss Seq
CACTTTTAACCACTTTACAGTGC
3' ss Score
5.38
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
AACCACACAGAGCCCCCAGGACCTAATGTTACAGCCACCCGCATGACTCCCATGATCCCTGCGACCTCTGGCAACTTCAGCACCTCAATAGGAAGTGATCCAGAGGGAGAGGCAGAGACCGAGGGACCCCAAAGTGAGAGGTATCTCCTTTCCTCCAGCAGCAGCCCTCTCGGGGGCCAAG
Seq A exon
TGCTCACCGAGTCCGGACAGCCGTGCAGGTTCCCTTTCCGCTATGGTGGCCGCATGCTGCACTCCTGTTCCTCTGAGGGAAGTGCCTACAGGAAGTG
Seq C2 exon
GTGTGCTACGACACACAACTACGACAGAGACCGGGCCTGGGGCTACTGTGCAGAGGCCACCCTGCCTGTGGAAGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009572-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.820 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0004014=fn2=PU(58.5=72.7)
C2:
PF0004014=fn2=PD(39.0=57.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAATGTTACAGCCACCCGCA
R:
CGTAGTTGTGTGTCGTAGCACA
Band lengths:
182-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]