MmuEX6017195 @ mm10
Exon Skipping
Gene
ENSMUSG00000029102 | Hgfac
Description
hepatocyte growth factor activator [Source:MGI Symbol;Acc:MGI:1859281]
Coordinates
chr5:35042290-35042934:+
Coord C1 exon
chr5:35042290-35042464
Coord A exon
chr5:35042566-35042662
Coord C2 exon
chr5:35042855-35042934
Length
97 bp
Sequences
Splice sites
3' ss Seq
TCCCTGACACCCCTCCACAGTGC
3' ss Score
7.13
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
AACCACACAGAGCCCCCAGGACCTAACGTTACAGCCACCCCCGTGACCCCCACGATCCCTGTGATCTCTGGGAATGTCAGCACCTCAACAGAAAGTGCTCCAGCAGCAGAGACTGAGGGACCCCAAAGTGAGAGGTACCCTCCTCCCTCCAGCAGCAGCCCCCCTGGGGGCCAAG
Seq A exon
TGCTCACCGAGTCTGGGCAGCCGTGCAGGTTCCCTTTCCGCTACGGTGGCCGCATGCTGCACTCCTGTACCTCTGAGGGAAGTGCCTACAGGAAGTG
Seq C2 exon
GTGCGCTACAACACACAACTATGACCGAGACCGGGCCTGGGGCTACTGTGCAGAGGTGACCCTGCCTGTGGAAGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029102-'1-5,'1-4,4-5=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.106 C2=0.404
Domain overlap (PFAM):
C1:
NO
A:
PF0004014=fn2=PU(58.5=72.7)
C2:
PF0004014=fn2=PD(39.0=57.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGGAATGTCAGCACCTCA
R:
AGGGTCACCTCTGCACAGTAG
Band lengths:
172-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types