GgaEX6036057 @ galGal4
Exon Skipping
Gene
ENSGALG00000015623 | HGFAC
Description
HGF activator [Source:HGNC Symbol;Acc:HGNC:4894]
Coordinates
chr4:81501939-81505472:-
Coord C1 exon
chr4:81505387-81505472
Coord A exon
chr4:81504458-81504698
Coord C2 exon
chr4:81501939-81502078
Length
241 bp
Sequences
Splice sites
3' ss Seq
CATTTACCTTTATATCTTAGCAA
3' ss Score
5.15
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
AAATCCAGATGAAGATGAGAAGCCATGGTGTTACATCATGAAGGACAACAGTTTGTCTTGGGAATACTGTAACATTCCATCTTGTG
Seq A exon
CAAGCAGGGAAAGGAGGCCACCAGTTCCAGAAGATATTGACACTTTTGCAGTTGCCAGAAGGCCATGTGGGAGAAGACATAAAAAAAGAAGTTTTGTGAGACCTAGGATTATTGGAGGTTCTTCATCTTTGCCTGGATCTCATCCCTGGACAGCAGCTATATATATTGGAGAAAGTTTCTGTGCTGGATCTCTTATTCAGACTTGCTGGGTTGTGTCAGCAGCACACTGCTTTGCTAACAG
Seq C2 exon
TCCTCATAAATCCTCTATTAAAGTTGTTCTTGGTCAGCACTTCTTTAATAGAACGACTGATGTAACGCAAACATTTGAAATAGAGAAATACATCTTATATCCTCAGTATTCAGTGTTCAGCCCTACTGAACATGATATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015623-'8-17,'8-13,9-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.012 C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(34.1=93.3)
A:
PF0008921=Trypsin=PU(18.8=54.3)
C2:
PF0008921=Trypsin=FE(20.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGATGAAGATGAGAAGCCA
R:
CAATATCATGTTCAGTAGGGCTG
Band lengths:
223-464
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]