RnoEX6042847 @ rn6
Exon Skipping
Gene
ENSRNOG00000009572 | Hgfac
Description
HGF activator [Source:RGD Symbol;Acc:70909]
Coordinates
chr14:80968514-80970392:-
Coord C1 exon
chr14:80970307-80970392
Coord A exon
chr14:80969642-80969897
Coord C2 exon
chr14:80968514-80968653
Length
256 bp
Sequences
Splice sites
3' ss Seq
CTGATGGCCTCCACTCCCAGAAT
3' ss Score
6.3
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GAACCCAGACAAGGACGAGAGGCCTTGGTGCTATGTGGTGAAGGACAGCGCGCTGTCATGGGAGTATTGTCGCCTGGCAGCTTGTG
Seq A exon
AATCCTTGGCCAGAGTCCATTCCCGAATCCCGGAGGTCCTAGCGACCCTGCCTGAGTCGACCTCAACTGCACGTCCGACCTGTGGCAAGAGGCACAAGAAGAGGACATTCTTGAGGCCACGCATCATTGGTGGCTCATCGTCTTTGCCCGGCTCACACCCCTGGCTGGCCGCCATCTACATTGGGAACGGCTTCTGTGCTGGGAGCCTCGTCCACACCTGCTGGGTAGTGTCTGCAGCCCACTGCTTCTCCAGCAG
Seq C2 exon
CCCCCCCAGGGACAGCATCACAGTGGTACTGGGTCAGCACTTCTTCAACCGCACGACGGATGTGACACAGACCTTTGCCATTGAGAAGTACGTGCCCTACACCCTCTACTCGGTGTTCAACCCCAACGACCATGACCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009572-'9-18,'9-14,11-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.023 C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(34.1=93.3)
A:
PF0008921=Trypsin=PU(18.8=51.2)
C2:
PF0008921=Trypsin=FE(20.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCAGACAAGGACGAGAGG
R:
TCATGGTCGTTGGGGTTGAAC
Band lengths:
220-476
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]