HsaEX6083366 @ hg38
Exon Skipping
Gene
ENSG00000109758 | HGFAC
Description
HGF activator [Source:HGNC Symbol;Acc:HGNC:4894]
Coordinates
chr4:3445876-3447631:+
Coord C1 exon
chr4:3445876-3445896
Coord A exon
chr4:3446042-3446294
Coord C2 exon
chr4:3447492-3447631
Length
253 bp
Sequences
Splice sites
3' ss Seq
CCGGTGACCTTTGCTCCCAGAAT
3' ss Score
7
5' ss Seq
CAGGTGCAC
5' ss Score
4.29
Exon sequences
Seq C1 exon
ATTTGGAAACTGAGGGCAGAG
Seq A exon
AATCCCTCACCAGAGTCCAACTGTCACCGGATCTCCTGGCGACCCTGCCTGAGCCAGCCTCCCCGGGGCGCCAGGCCTGCGGCAGGAGGCACAAGAAGAGGACGTTCCTGCGGCCACGTATCATCGGCGGCTCCTCCTCGCTGCCCGGCTCGCACCCCTGGCTGGCCGCCATCTACATCGGGGACAGCTTCTGCGCCGGGAGCCTGGTCCACACCTGCTGGGTGGTGTCGGCCGCCCACTGCTTCTCCCACAG
Seq C2 exon
CCCCCCCAGGGACAGCGTCTCCGTGGTGCTGGGCCAGCACTTCTTCAACCGCACGACGGACGTGACGCAGACCTTCGGCATCGAGAAGTACATCCCGTACACCCTGTACTCGGTGTTCAACCCCAGCGACCACGACCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109758-'12-16,'12-15,14-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.024 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(18.8=51.8)
C2:
PF0008921=Trypsin=FE(20.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGGAAACTGAGGGCAGAG
R:
TCGTGGTCGCTGGGGTTG
Band lengths:
156-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains