GgaEX6036355 @ galGal3
Exon Skipping
Gene
ENSGALG00000013254 | LOXL3
Description
NA
Coordinates
chr4_random:108786-112289:+
Coord C1 exon
chr4_random:108786-108949
Coord A exon
chr4_random:109216-109427
Coord C2 exon
chr4_random:112070-112289
Length
212 bp
Sequences
Splice sites
3' ss Seq
GAGGCTGACGTGCCTTGCAGACG
3' ss Score
5.92
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GGCGGATCTGGTTGGACAACGTGAACTGTGCGGGGAATGAGAAGAGCATCAGGGACTGCAAACACCGGGGCTGGGGGAACAGCGACTGCAGCCACGAGGAGGATGCGGGCGTCATCTGCAAGGATGAGCGCATCCCAGGCTTCAAAGACTCCAACGTCATCGAG
Seq A exon
ACGGAGCAGAGCCACGTGGAGGAGGTCCGTCTGCGCGCGGTGGTGTCGGGGGCACAGCGGCGGCTGCCAGTGACAGAGGGCATCGTGGAGGTGCGCTACAAGGATGGCTGGGCACAGATCTGCGATGAGGGCTGGGACAGCAAGAACAGCCACGTCATCTGCGGCATGATGGGCTTCCCCACTGAGAAGAAGGTGAACAGGAACTTCTACAA
Seq C2 exon
GCTGTTTGCGGAGCGGCAGCAGCTCAACTACCGCCTGCACTCAGTGTCCTGCACAGGGACAGAGGTGCACATCTCCATGTGCACGTTCCAGTTCTACCGGGGCAACTCCTCAGCAGCCTGCAGCACTGGCATGCCCGCTGTTGTCAGCTGCCTGCCCGGGCCCCTCTTTGCTACCAGCAGCACCCAGAAGAAGAAGCAGCGCCAGCAGCAGCAGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013254-'1-4,'1-1,2-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.014 C2=0.176
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(41.7=72.7)
A:
PF0053013=SRCR=PU(50.0=73.2)
C2:
PF0053013=SRCR=PD(49.0=68.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCGGGGAATGAGAAGAG
R:
GGCAGGCAGCTGACAACAG
Band lengths:
295-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]