BtaEX6042979 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018578 | LOXL3
Description
lysyl oxidase-like 3 [Source:HGNC Symbol;Acc:HGNC:13869]
Coordinates
chr11:10075542-10086584:+
Coord C1 exon
chr11:10075542-10075705
Coord A exon
chr11:10076334-10076548
Coord C2 exon
chr11:10086368-10086584
Length
215 bp
Sequences
Splice sites
3' ss Seq
GCTTGTGGCCCCCTCCCCAGGTA
3' ss Score
8.22
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
Exon sequences
Seq C1 exon
GCCGCATCTGGCTGGACAACCTGAGCTGCAGTGGGACTGAGCGGAGTGTGACTGAATGTGCCTCCCGGGGTTGGGGGAACAGTGACTGTACCCACGATGAGGATGCTGGGGTCATCTGCAAGGACGAGCGCCTCCCTGGCTTCTCAGATTCCAATGTCATTGAG
Seq A exon
GTAGAGCATCACCTGCAAGTGGAGGAGGTGCGACTTCGGCCAGCTGTTGGAAGGGGCAGACGGCCCCTGCCTGTGACTGAGGGACTGGTCGAAGTCAGGCTTCCGGATGGCTGGTCGCAAGTGTGTGACAAAGGCTGGAGTGCGCACAACAGCCATGTGATCTGCGGGATGCTGGGCTTCCCGAGCGAAAAGCGGGTCAACGTGGGCTTCTACAG
Seq C2 exon
GCTGCTGGCCCAGCGGCAGCAACACTCCTTTGGTCTGCATGGGGTGGCGTGCGTGGGCACGGAGGCCCACCTCTCCCTCTGCTCTTTGGAATTCTATCGAGCCAATGACACCACCAGGTGCCCGGGGGGGGCCCCTGCGGTGGTGAGCTGTGTGCCAAGCCCTCTCTACGCAGCATCCAGTGGCCAGAAGAAGCAACAGTCGAAGCCTCAGGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018578-'2-10,'2-5,3-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.037 C2=0.164
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(41.7=72.7)
A:
PF0053013=SRCR=PU(50.0=72.2)
C2:
PF0053013=SRCR=PD(49.0=69.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACAGTGACTGTACCCACG
R:
CTGAGGCTTCGACTGTTGCTT
Band lengths:
300-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]