DreEX6060749 @ danRer10
Exon Skipping
Gene
ENSDARG00000039563 | loxl3b
Description
lysyl oxidase-like 3b [Source:ZFIN;Acc:ZDB-GENE-030131-8210]
Coordinates
chr13:15109177-15147046:+
Coord C1 exon
chr13:15109177-15109340
Coord A exon
chr13:15109660-15109877
Coord C2 exon
chr13:15146839-15147046
Length
218 bp
Sequences
Splice sites
3' ss Seq
GTGACATGTGTTTCTCTCAGGTG
3' ss Score
9.4
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GGAAAATTTGGCTTGACAATGTGCAGTGCAGCGGCAGTGAAAGAAGTGTGTCAGTGTGCAAATCTCGAGGTTGGGGAAACAGTGACTGCACTCATGATGAAGACGCCGGAGTCATCTGTAAAGATGAGAGACTGCCTGGATTTGTGGACTCTAATGTTATAGAG
Seq A exon
GTGCAGGTGGACGAGAACAGGGTGGAGGAGGTGCGTTTGCGGCCCGTCTTTACTACGGCTACTAAGCGGATGCCGGTCACCGAAGGAGTAGTGGAGGTTAAGAATAAGGACGGATGGGCTCAGATCTGTGATATTGGCTGGACACCCAAAAATACACATGTGGTTTGTGGCATGATGGGATTCCCCCATGAGAAGAAGGTCAATAAGAACTTCTACAA
Seq C2 exon
GCTGTATGCTGAGCGGCAGAAGAACTTTTTTCTGGTTCATTCAGTGGCTTGTTTAGGCACAGAAGTGCACTTGGCCGCATGTCCTCTGGAGTTTAACTATGGCAATGCCACCGAGTCATGTCCTGGAGGAATGCCTGCTGTGGTCAGCTGTGTGCCTGGACCACTGTACACACAGAGCCCTACTATGAAGAAAAAACTCAAAATGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039563-'5-5,'5-2,6-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.021 C2=0.111
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(41.7=72.7)
A:
PF0053013=SRCR=PU(49.5=69.9)
C2:
PF0053013=SRCR=PD(49.5=72.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGACAATGTGCAGTGCAGC
R:
GACCACAGCAGGCATTCCTC
Band lengths:
298-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]