RnoEX0050375 @ rn6
Exon Skipping
Gene
ENSRNOG00000061373 | Loxl3
Description
lysyl oxidase-like 3 [Source:RGD Symbol;Acc:1311011]
Coordinates
chr4:113870628-113880663:+
Coord C1 exon
chr4:113870628-113870791
Coord A exon
chr4:113871509-113871723
Coord C2 exon
chr4:113880444-113880663
Length
215 bp
Sequences
Splice sites
3' ss Seq
TCTGTCTGGTCCCATCTCAGGTG
3' ss Score
9.07
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
Exon sequences
Seq C1 exon
GCCGAATCTGGTTGGACAATCTGAGCTGCAAGGGTACTGAAGGAAGTGTGACTGAATGTGCCTCCCGGGGCTGGGGAAACAGTGACTGTACCCATGACGAGGATGCTGGGGTCATCTGCAAGGACCAGCGCCTTCCCGGTTTCTCAGACTCCAACGTCATTGAG
Seq A exon
GTGGATCATCAGCTCCAAGTGGAGGAAGTGCGACTCCGACCAGCTGTGGAGTGGGGCAGGCGACCCCTGCCTGTGACTGAGGGCCTGGTTGAAGTCAGGCTTCCTGAAGGCTGGTCGCAAGTGTGTGACAAAGGCTGGAGTGCCCACAACAGCCACGTAGTCTGCGGTATGCTGGGTTTCCCTGGAGAAAAGAGAGTCAACATGGCCTTCTACAG
Seq C2 exon
GATGCTGGCCCAGAAGAAGCAACACTCCTTTGGTCTACACAGCGTGGCATGTGTGGGCACAGAAGCCCACCTCTCCCTTTGCTCTCTGGAGTTCTATCGTGCCAATGACACCACCAGATGTGCTGGTGGGAGCCCTGCAGTGGTGAGCTGTATGCTGGGCCCTCTTTATGCCACCTCTACTGGTCAGAAGAAGCAGCAACATTCTAAGCCTCAAGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061373-'3-8,'3-5,5-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.216
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(41.7=72.7)
A:
PF0053013=SRCR=PU(48.5=68.1)
C2:
PF0053013=SRCR=PD(50.5=68.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGCAAGGGTACTGAAGGA
R:
CATACAGCTCACCACTGCAGG
Band lengths:
295-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]