GgaEX6037377 @ galGal3
Exon Skipping
Gene
ENSGALG00000006998 | Q5ZKF9_CHICK
Description
NA
Coordinates
chr5:17619108-17640916:+
Coord C1 exon
chr5:17619108-17619239
Coord A exon
chr5:17639682-17640078
Coord C2 exon
chr5:17640745-17640916
Length
397 bp
Sequences
Splice sites
3' ss Seq
ACGAATCGTTTTCTCCCCAGGTG
3' ss Score
10.58
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
TTCACACTCCCTGTGAAGAAAACAATGGTGGTTGCTCCCATCTGTGCCTGCTATCACCAAGAGACCCCTTCTATAGCTGTGCCTGTCCCACTGGTGTGCAGCTGGAAGATGATGGCAGGACGTGCAAATCAG
Seq A exon
GTGCTGAAGAAGTGTTGCTGCTTGCTAGGAGGACTGACTTGAGAAGGATTTCCTTGGACATGCCAGATTTCACTGACATTATTCTGCAGATAGACAATATCAGGCATGCAATTGCCATAGACTATGATCCTGTGGAAGGCTACATCTACTGGACTGATGATGATGTTCGGGCAATTCGTCGGGCGTACCTTGATGGCTCTGGAGCACAGACTCTGGTAACCACAGAAATCAACCATCCAGATGGTATTGCTGTGGACTGGGTGGCAAGGAACCTGTACTGGACTGATACTGGAACAGACCGCATTGAAGTGACCCGTTTGAATGGAACATCAAGAAAGATCCTTATATCAGAAAATCTGGATGAACCTCGTGCAATTGTGCTCAATCCTGTGATGGG
Seq C2 exon
CTACATGTATTGGACAGACTGGGGTGAAAGTCCAAAGATAGAATGTGCTTATTTGGATGGATCAGAGAGGAGAGTTCTGGTGAATACGTCCTTGGGTTGGCCTAACGGCTTGGCACTGGATCTTGAAGAGGACAAACTTTACTGGGGAGATGCCAAAACAGATAAAATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006998-'6-6,'6-5,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=84.4)
A:
PF0005812=Ldl_recept_b=WD(100=30.8),PF0005812=Ldl_recept_b=WD(100=30.8),PF0005812=Ldl_recept_b=PU(0.1=0.0)
C2:
PF0005812=Ldl_recept_b=WD(100=72.4),PF0005812=Ldl_recept_b=PU(33.3=22.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCCTGTGAAGAAAACAATGGT
R:
TTTTATCTGTTTTGGCATCTCCCCA
Band lengths:
294-691
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]