RnoEX6005904 @ rn6
Exon Skipping
Gene
ENSRNOG00000015911 | Lrp5
Description
LDL receptor related protein 5 [Source:RGD Symbol;Acc:1309329]
Coordinates
chr1:218863965-218879009:-
Coord C1 exon
chr1:218878878-218879009
Coord A exon
chr1:218865769-218866165
Coord C2 exon
chr1:218863965-218864136
Length
397 bp
Sequences
Splice sites
3' ss Seq
CTCTGCTTGTATCTCCACAGGGG
3' ss Score
11.19
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
TCCACACGCCATGTGAGGAAGGCAACGGCGGCTGCTCCCACCTGTGCCTGCTGTCCCCGAGGGAGCCCTTCTACTCCTGCGCCTGCCCTACTGGTGTACAGTTGCAGGACAATGGCAAGACGTGTAAGGCAG
Seq A exon
GGGCTGAGGAAGTGCTGCTGCTGGCCCGGAGGACAGACCTGAGAAGGATCTCTCTGGACACCCCTGACTTCACAGACATAGTGCTGCAAGTGGGCGACATTCGGCATGCCATCGCCATCGACTATGACCCACTGGAGGGCTACGTGTACTGGACAGATGACGAGGTGCGGGCTATCCGCAGGGCGTACCTGGATGGCTCAGGTGCGCAGACCCTTGTGAACACCGAGATCAATGATCCCGATGGCATTGCCGTGGACTGGGTCGCCCGGAACCTCTACTGGACAGATACAGGCACTGACAGAATTGAGGTGACTCGCCTCAACGGCACCTCCCGAAAGATCCTGGTGTCCGAGGACCTGGACGAACCTCGAGCCATTGTGTTGCACCCTGTGATGGG
Seq C2 exon
CCTCATGTACTGGACAGACTGGGGAGAGAACCCCAAAATCGAATGTGCCAACCTAGATGGGCGAGATCGGCATGTCCTGGTGAACACCTCCCTTGGGTGGCCCAATGGACTGGCCCTGGACCTGCAGGAGGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015911-'12-8,'12-7,15-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=84.4)
A:
PF0005812=Ldl_recept_b=WD(100=30.8),PF0005812=Ldl_recept_b=WD(100=30.8),PF0005812=Ldl_recept_b=PU(0.1=0.0)
C2:
PF0005812=Ldl_recept_b=WD(100=72.4),PF0005812=Ldl_recept_b=PU(33.3=22.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCCATGTGAGGAAGGCAA
R:
TTTTATCAGTTTTGGCATCCCCC
Band lengths:
294-691
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]