GgaEX6040198 @ galGal3
Exon Skipping
Gene
ENSGALG00000005086 | F1NYX5_CHICK
Description
NA
Coordinates
chr6:16589259-16590528:-
Coord C1 exon
chr6:16590423-16590528
Coord A exon
chr6:16589537-16589591
Coord C2 exon
chr6:16589259-16589363
Length
55 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTTTGTCTGCTTAGGTT
3' ss Score
11.04
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
AATCAAAAGAAAACTAAGGCCAGGAGCAAAGTGAGAACTTACCAACATGAAGTTAATCATCTTTCTCACAGTAACTCTCTGCACACTTGTCACAGGACTTGATTCT
Seq A exon
GTTTACATCAGGCAGTACTACAAGTTATCACATAAACACAGACCCCAACATAGAG
Seq C2 exon
AATGCCAGTGTCTGAATGGCGGAACCTGCATTACCTATCGCTTCTTCAGCCAAATTAAGCGTTGCCTGTGCCCAGAAGGATATGGTGGACTTCACTGTGAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005086-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAAGGCCAGGAGCAAAGTG
R:
ATAGGTAATGCAGGTTCCGCC
Band lengths:
132-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]